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UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles.
PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Its capabilities include 3D visualization, rendering, and animation of molecules.
Free and paid versions available
VMD is a molecular visualization program designed for the visualization and analysis of biological systems such as proteins, nucleic acids, and lipid...
Jmol is an open-source Java viewer for chemical structures in 3D.
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Rasmol is a molecular visualization software used for visualizing molecules in 3D. It is widely used in the field of bioinformatics and...
Gnome Chemistry Utils is a set of chemical tools for the GNOME desktop. It includes a 2D molecular editor, chemical calculator, and...
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