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Clustal X is a widely used software for multiple sequence alignment.
MUSCLE is a popular tool for multiple sequence alignment with high accuracy.
MAFFT is a versatile software for multiple sequence alignment with various algorithms.
T-Coffee is a tool that combines multiple sequence alignment methods for improved accuracy.
EMBL-EBI and collaborators
Clustal Omega is a free multiple sequence alignment tool for researchers comparing protein or nucleotide sequences. It uses profile hidden Markov models...
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